Multi-point enzyme immobilization,surface chemistry,and novel platforms: a paradigm shift in biocatalyst design

Engineering enzymes with improved catalytic properties in non-natural environments have been concerned with their diverse industrial and biotechnological applications. Immobilization represents a promising but straightforward route, and immobilized biocatalysts often display higher activities and stabilities compared to free enzymes. Owing to their unique physicochemical characteristics, including the high-specific surface area, exceptional chemical, electrical, and mechanical properties, efficient enzyme loading, and multivalent functionalization, nano-based materials are postulated as suitable carriers for biomolecules or enzyme immobilization. Enzymes immobilized on nanomaterial-based supports are more robust, stable, and recoverable than their pristine counterparts, and are even used for continuous catalytic processes. Furthermore, the unique intrinsic properties of nanomaterials, particularly nanoparticles, also confer the immobilized enzymes to be used for their broader applications. Herein, an effort has been made to present novel potentialities of multi-point enzyme immobilization in the current biotechnological sector. Various nano-based platforms for enzyme/biomolecule immobilization are discussed in the second part of the review. In summary, recent developments in the use of nanomaterials as new carriers to construct robust nano-biocatalytic systems are reviewed, and future trends are pointed out in this article.     

Population biology and breeding cycle of the burrowing shrimp Callichirus seilacheri (Decapoda,Callianassidae) from the eastern tropical Pacific

Year-round continuous reproduction in tropical regions is an established paradigm in marine ecology. In this study, we tested this paradigm using the ghost shrimp Callichirus seilacheri from the tropical eastern Pacific as a model species. We also examined size-frequency distribution, sex ratio, and recruitment cycle to contribute to the biological knowledge of this species. To this end, a total of 456 individuals of C. seilacheri were collected during 12 months of sampling. Population structure was symmetrical for both sexes, and the overall sex ratio did not differ from evenness. Males outnumbered females in smaller size classes, though, revealing a potential sex-dependent mortality in small individuals. The breeding pattern followed the well-marked seasonal regime of the region, with ovigerous females registered during the rainy season. While natural variation in the seawater temperature had no influence on reproduction of this species, changes in water salinity possibly triggered the appearance of egg-bearing females in the population. Recruitment occurred throughout the year but was more intense during the dry season, following the appearance of ovigerous females. The adaptability of the life cycle of C. seilacheri to the seasonal climate provides further evidence that reproduction in tropical species is not always continuous.     

Low genetic diversity in the vulnerable Goitred Gazelle,Gazella subgutturosa (Cetartiodactyla: Bovidae), in Iran: potential genetic consequence of recent population declines

The Goitered Gazelle, Gazella subgutturosa, is the most widespread gazelle species in the Middle East and central Asia inhabiting desert and semi-desert habitats. Today it is threatened and its geographic range and population size have experienced significant decline in the last decades. In Iran, the remnant populations are confined to fragmented habitats. We aimed to characterise genetic diversity and phylogenetic status of the populations of Goitered Gazelle in Central Iran and to evaluate the potential effect of a historic population bottleneck on the genetic variation of today’s population. We used noninvasive sampling to uncover structure and level of genetic variation in a fragment of the cytochrome-b gene from 170 samples. Genealogical analyses were performed using HKY+I model and phylogenetic trees reconstructed using Bayesian inference and maximum likelihood. We found extremely low levels of genetic variation, with altogether only five haplotypes in samples from different populations. Overall haplotype diversity was 0.081 and nucleotide diversity 0.0003. The mean observed mismatch between any two sequences was 0.093 with the largest peak for small numbers. The mismatch distribution fit the model of population expansion and suggested that gazelles had experienced a sudden expansion. An unrooted median-joining network analysis of mtDNA haplotypes showed a star-like structure which few mutations steps separating the haplotypes from other regions. Our findings strengthen the urgency of preserving the species’ genetic diversity to prevent local extinction.     

近年来乌梁素海疣鼻天鹅种群数量变化及原因分析

为查清内蒙古乌梁素海湖泊湿地疣鼻天鹅(Cygnus olor)繁殖期和秋季迁徙前期种群数量,2014至2017年采用路线统计法和样点统计法对其进行精确计数统计,结合近十余年来的文献数据和监测记录,探讨了种群数量的变化及原因。结果显示,2015至2017年春季繁殖成鸟数量依次为84只、92只、80只,基本稳定;2014至2017年,秋季种群数量依次为411只、302只、281只、153只,逐年减少;近几年适宜繁殖地和觅食地面积不断缩小、天敌偷袭、捡蛋和投毒等因素影响亚成鸟和幼鸟的生存。根据文献和保护区监测数据,1996至2004年种群数量逐年增多,与自然保护区的建立、严禁捡蛋和没收猎枪有关,而2005至2013年因干旱缺水、水域被开发利用、芦苇(Phragmites australis)和宽叶香蒲(Typhalatifolia)面积扩增、水质恶化、富营养化加重等原因种群数量下降。研究表明,近几年乌梁素海被过度开发利用,人为干扰频繁,影响疣鼻天鹅正常繁殖栖息;栖息地的科学管理和严禁捡蛋及投毒行为,对该种群的生存及增长至关重要。     

Highly heterogeneous residual malaria risk in western Thailand

Over the past decades, the malaria burden in Thailand has substantially declined. Most infections now originate from the national border regions. In these areas, the prevalence of asymptomatic infections is still substantial and poses a challenge for the national malaria elimination program. To determine epidemiological parameters as well as risk factors for malaria infection in western Thailand, we carried out a cohort study in Kanchanaburi and Ratchaburi provinces on the Thailand-Myanmar border. Blood samples from 999 local participants were examined for malaria infection every 4 weeks between May 2013 and Jun 2014. Prevalence of Plasmodium falciparum and Plasmodium vivax was determined by quantitative PCR (qPCR) and showed a seasonal variation with values fluctuating from 1.7% to 4.2% for P. vivax and 0% to 1.3% for P. falciparum. Ninety percent of infections were asymptomatic. The annual molecular force of blood-stage infection (_molFOB) was estimated by microsatellite genotyping to be 0.24 new infections per person-year for P. vivax and 0.02 new infections per person-year for P. falciparum. The distribution of infections was heterogenous, that is, the vast majority of infections (>80%) were found in a small number of individuals (<8% of the study population) who tested positive at multiple timepoints. Significant risk factors were detected for P. vivax infections, including previous clinical malaria, occupation in agriculture and travel to Myanmar. In contrast, indoor residual spraying was associated with a protection from infection. These findings provide a recent landscape of malaria epidemiology and emphasize the importance of novel strategies to target asymptomatic and imported infections.     

种间竞争对四种储粮害虫种群动态的影响

在30 ℃、75 %相对湿度条件下研究种间竞争对玉米象(Sitophilus zeamais)、谷蠹(Rhizopertha domini-ca)、赤拟谷盗(Triboliumcastaneum)和锈赤扁谷盗(Cryptolestes ferrugineus)4种主要储粮害虫种群动态的影响,并对种群动态进行回归分析。结果表明,玉米象与谷蠹、赤拟谷盗与锈赤扁谷盗混合饲养种群增长均受到显著抑制,玉米象和谷蠹对赤拟谷盗和锈赤扁谷盗的种群增长具有明显的促进作用,赤拟谷盗和锈赤扁谷盗对玉米象和谷蠹的种群增长具有一定的抑制作用。回归分析结果表明玉米象种群最大增长潜能最大,锈赤扁谷盗最小,种群增长率变化规律不明显。     

Analysis of F ST outliers at allozyme loci in Pacific salmon: implications for natural selection

Natural selection has been invoked to explain the observed geographic distribution of allozyme allele frequencies for a number of teleost species. The effects of selection on allozyme loci in three species of Pacific salmon were tested. A simulation-based approach to estimate the null distribution of population differentiation (F _ST) and test for F _ST outliers was used. This approach showed that a majority of allozyme loci conform to neutral expectations predicted by the simulation model, with relatively few F _ST outliers found. No consistent F _ST outlier loci were found across species. Analysis of population sub-groups based on geography and genetic identity reduced the number of outlier loci for some species, indicating that large geographic groups may include genetically divergent populations and/or that there is geographic heterogeneity in selection pressure upon allozyme loci. Two outlier allozyme loci found in this analysis, lactate dehydrogenase-B and malic enzyme, have been shown to be influenced by selection in other teleost species. This approach is also useful in identifying allozyme loci (or other genetic markers) that meet assumptions for population genetic study.     

枣麦间作枣园主要蚧虫复合种群结构及生态位

为了有效地控制枣树蚧害,2002年在太谷地区对枣麦间作枣园的康氏粉蚧(Pseudococcus comstock Kuwane)、日本蜡蚧(Ceroplastes japonicus Green)和梨园蚧(Quadraspidiotus perniciosus Comstock)的复合种群结构及其生态位进行了系统研究.结果表明,在枣树发育早期,3种蚧虫分布范围主要在下、中部的东、南方位,康氏粉蚧的时空二维生态位的宽度较大,是该时期的优势种.到中期3种蚧虫复合种群的分布聚集在树冠上部的西、北方位,时 空二维生态位的宽度以日本蜡蚧较大,种间相似程度和竞争不明显.后期3种蚧虫的复合种群结构在各部位的各个方位的分布无明显差异,但梨园蚧的虫口密度较大,日本蜡蚧在生态位上占据较大的空间.与枣树发育的中期相比,3种蚧虫复合种群结构的相似性与种间竞争系数的平均值要小.蚧害预防应早期控制康氏粉蚧,中期调治3种蚧虫的危害,后期应采取措施压低越冬虫源.     

甘肃东大山自然保护区岩羊生态行为的初步观察

2004年7月和8月,通过样线调查、野外直接跟踪观察和瞬间取样的方法,对东大山自然保护区岩羊(Pseudois nayaur)的种群结构和生态行为进行了初步研究。在观察到的720只岩羊中,719只组成了50个群,最大的群82只,最小的群2只,平均群大小(14.38±15.83)只(n=50)。雌雄性比为1∶0.63,成年雌体、亚成体和幼体之比是1∶0.4∶0.24。岩羊的昼间活动中,上午和下午各有一个瞬间觅食高峰,分别在6:30时和15:30时,中午有一段较长时间的休息期。通过对一个46只岩羊群连续12 d的野外跟踪观察,发现该岩羊群昼间的活动范围基本上在1.47 km2内。对152个自然死亡的雄性岩羊头骨的分析表明,东大山雄性岩羊的自然死亡年龄在7.5~11.5龄,其中9.5龄是其自然死亡的高峰。     

Genetic structure of black abalone (Haliotis cracherodii) populations in the California islands and central California coast: Impacts of larval dispersal and decimation from withering syndrome

The genetic structure of black abalone populations in the southern California Islands and central California coast was investigated by protein electrophoresis. Detailed sampling of San Nicolas Island (SN) permitted investigation of microgeographic genetic differentiation among local geomorphological features. In addition, temporal genetic differentiation was assessed by comparing juveniles and adults at three islands, San Miguel (SM), Santa Cruz (SC) and San Nicolas (SN). Mainland and island locations were genetically differentiated based on allele frequency differences and the presence of private alleles in some island populations. Although microgeographic genetic structure among sites on SN was weak and not statistically significant, heterozygosity varied among sites, with diversity decreasing from west to east. In addition, investigation among cohorts showed that adults were genetically differentiated among island locations, whereas no differences among juveniles were detected. Genetic differentiation between adult and juvenile abalones was detected at SC but not SM or SN. These data are generally consistent with local recruitment augmented by relatively more gene flow among island populations than among island and mainland populations, and possible selection acting on immigrant recruits.